species:   Rhsol
pid:       PID0572
parent:    Rhi-milR-166
paralog:   
locus:     KB317740.1:94956-95053
matures:   ['UUGGCAUCAGAAGUUGUAGAAA', 'GAUGCAGCUUGUUAUGUUGGAUUUAACA']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317740.1:94956-95053

3 out of bounds
46 alignments
45 proper strand
44 stranded perfect matches

         *******************************                        *************************         
UGUCAAGUGCAUGAUGCAGCUUGUUAUGUUGGAUUUAACAGGUUGGUCACAGAUGUGACCAGCCAGUUGGCAUCAGAAGUUGUAGAAACAGAUUGUUG
...(((........((((((((.(.((((......((((.((((((((((....)))))))))).)))))))).).))))))))........)))...
------------------------------------------------------------------UUGGCAUCAGAAGUUGUAGAAA---------- l=22 a=0 c
------------GAUGCAGCUUGUUAUGUUGGAUUUAACA---------------------------------------------------------- l=28 a=0 c*
------------------------------------------------------------------UUGGCAUCAGAAGUUGUAGAAAC--------- l=23 a=10 ma
-----------UGAUGCAGCUUGUUAUGUUGGAUUUAACA---------------------------------------------------------- l=29 a=0 ma*

-----------------------------------------------------------CAGCCAGUUGGCAUCAGAAGUUGU--------------- l=24 a=1 
--------------------------------------------------------------CCAGUUGGCAUCAGAAGUUGUAG------------- l=23 a=8 
--------------------------------------------------------------CCAGUUGGCAUCAGAAGUUGUgG------------- l=23 a=1 
---------------------------------------------------------------CAGUUGGCAUCAGAAGUUGUAG------------- l=22 a=3 
---------------------------------------------------------------CAGUUGGCAUCAGAAGUUGUAGA------------ l=23 a=2 
---------------------------------------------------------------CAGUUGGCAUCAGAAGUUGUAGAAA---------- l=25 a=1 
---------------------------------------------------------------CAGUUGGCAUCAGAAGUUGUAGAAAC--------- l=26 a=1 
------------------------------------------------------------------UUGGCAUCAGAAGUUGUAGAAAC--------- l=23 a=10 (ma)
------------------------------------------------------------------UUGGCAUCAGAAGUUGUAGAAACA-------- l=24 a=3 
------------------------------------------------------------------UUGGCAUCAGAAGUUGUAGAAACAG------- l=25 a=4 
-------------------------------------------------------------------UGGCAUCAGAAGUUGUAGAAAC--------- l=22 a=2 
-------------------------------------------------------------------UGGCAUCAGAAGUUGUAGAAACA-------- l=23 a=4 
-------------------------------------------------------------------UGGCAUCAGAAGUUGUAGAAACAG------- l=24 a=3 
-------------------------------------------------------------------UGGCAUCAGAAGUUGUAGAAACAGA------ l=25 a=1 
-------------------------------------------------------------------UGGCAUCAGAAGUUGUAGAAACAGAU----- l=26 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101000
fn-111
